PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002316
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 310aa    MW: 32798.7 Da    PI: 9.0918
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-24423PU_refplantGDBView CDS
gnl|UG|Vun#S45823166PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.7e-3970151383
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+   a++s+s+++
  Vun002316  70 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGNSVSAQG 151
                6999****************************************************************88854444444433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-3274161IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01675129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDPKSSKQPV AQEVVPNFLS LPQQQSPPSQ QQQQEQGSNN NNMGENKGGE MKDFQIVVGE  60
KDESKKQLGP KRSSNKDRHT KVEGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ  120
QAEPSIIAAT GTGTIPASAL AAAGNSVSAQ GASLSSGLHQ KIDELGGPIW GQVAVGPVGK  180
WLGGILGRPH VATGLWPPHV SGFGFQTSSA PSNAALGTES SNYLQKIAFP GFDLPAAPTN  240
MGHMSFTSIL GAAGAHQMPG LELGLSQDGH IGVLNPQALS QIYQQMGQAR VQQQQHQQTP  300
AKDDSQGSGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161676.11e-174hypothetical protein PHAVU_001G089100g
SwissprotQ9LSD53e-80TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A0L9U6J01e-174A0A0L9U6J0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVY51e-174A0A0S3RVY5_PHAAN; Uncharacterized protein
STRINGGLYMA19G26560.11e-144(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.11e-78TCP family protein